PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009106203.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 345aa    MW: 38352.9 Da    PI: 6.8218
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009106203.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702223.83.4e-691142812154
          DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel..........kskkqs 84 
                     r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a+s+   +a++kr re           ++    
  XP_009106203.1 114 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSRetPNANAKRLREVdggdndddkdHNGGGG 208
                     7899*******************************************************999998866334444444445666665544455667 PP

          DUF702  85 alsstklssaeskkelet.sslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                     ++ +t++++++s++ le+ ++lP+evss+avfrcvrvss+++  +++e+aYqtav+igGhvfkGiLydqG+++
  XP_009106203.1 209 SSLATRVVNTNSNSGLEAiQKLPPEVSSPAVFRCVRVSSIEEdeDDQEYAYQTAVHIGGHVFKGILYDQGPDQ 281
                     788888899888888775167*******************98535567***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.8E-64117280IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.1E-28119161IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.6E-26230279IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAGFFYLGGR DNNNSKQDHH QVDKDHHHHQ DKSNYLYLYK DEIYNTNKGF EIWPPQYFQQ  60
QQEQQQHVTP PSNFYSFGMV PSGSSSGNNN NNRSRGLYFN VVSDHEPGGF TVTRQGGMNC  120
QDCGNQAKKD CPHMRCRTCC KSRGFHCQTH VKSTWVPAAK RRERLAQLAS LQHHSASSRE  180
TPNANAKRLR EVDGGDNDDD KDHNGGGGSS LATRVVNTNS NSGLEAIQKL PPEVSSPAVF  240
RCVRVSSIEE DEDDQEYAYQ TAVHIGGHVF KGILYDQGPD QDHHHQFNLL ASTATTTNAE  300
EIAAKTAVTI AGNNNSGLIL DPSSLYPTQL NSFIAGTPFF TPPRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052670.0GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106203.10.0PREDICTED: protein SHI RELATED SEQUENCE 5
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLM4DH600.0M4DH60_BRARP; Uncharacterized protein
STRINGBra015837.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-156SHI-related sequence 5